PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G24030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 469aa    MW: 51915.2 Da    PI: 8.8754
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G24030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.6e-1294146855
              AP2   8 wdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  OBART05G24030.1  94 RHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 146
                      799***********888855666447*************************98 PP

2AP227.58.1e-09189223138
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                      s+y+GV +++++grW+A+I   +   g +k+ +lg++  
  OBART05G24030.1 189 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSE 223
                      89****************99966...3.6********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.42674154IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1393155IPR016177DNA-binding domain
SMARTSM003805.7E-1894160IPR001471AP2/ERF domain
PfamPF008471.2E-894146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1394155IPR001471AP2/ERF domain
PfamPF008472.1E-4189223IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-6189230IPR016177DNA-binding domain
CDDcd000183.14E-17189288No hitNo description
SMARTSM003803.4E-11190294IPR001471AP2/ERF domain
PROSITE profilePS5103212.694190288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-4190228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-6263288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDHSIMMVKN EIENYSGSSP AMIINAPEGG AEAGPVVRRR RREPSLLAPI SGDTNGGGIG  60
KTSLSGITVK RSSRFRGVSR FRACRDDKKI LSCRHRWTGR FEAHLWDKNS WNPTQRKKGK  120
QVYLGAYDEE EAAARAYDLA ALKYWGPTTY TNFPVMDYEK ELKIMENLTK EEYLASLRRK  180
SSGFSRGVSK YRGVARHHQN GRWEARIGRV FGNKYLYLGT YSEYKNSAYI LFYIVNWYSN  240
ASKTSHLNIS PSAILPKSFS PGTQEEAARA YDIAAIEYKG VNAVTNFDLR SYITWLKPTP  300
AHVAMNPAEA LAMQIPVDHF LPMETQMMML PQSNAFTSYH NAQSLGGGDG GSSSSNNQEA  360
SMIISPSGSS RKRSSSTALS LLLKSSMFRQ LVEKNSDAGE ENGGEMREPG AHPGEGYEYH  420
NFFQGDAAPD MDMCDLLSSG NVHAASGSAG FEEDIACYSG FGSMQSLQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0971120.0AC097112.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1741_B01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639258.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT1
SwissprotQ6X5Y61e-78WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A0D3GA790.0A0A0D3GA79_9ORYZ; Uncharacterized protein
STRINGBGIOSGA017664-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-66AP2 family protein